MBZUAI's Computational Biology department hosted the first Data Carpentry workshop in the UAE, a global initiative focused on foundational data science skills for researchers. The workshop included 35 participants from academia and industry, covering topics like data tidiness, cloud computing, command lines, and data wrangling. 70% of the participants were female, and several were Emirati nationals. Why it matters: This initiative addresses the growing need for computational skills in genomics research, bridging the gap between wet lab experiments and data analysis for scientists in the UAE.
KAUST researchers organized a week-long workshop on bioinformatics, covering genomics and transcriptomics data analysis. The workshop targeted students, postdocs, and senior researchers, providing hands-on training in coding and analysis using tools like R, Python, and shell scripts. Attendees with little prior computational biology experience were introduced to fundamental concepts and tools for handling large sequencing datasets. Why it matters: The workshop addresses the increasing need for bioinformatics expertise at KAUST and in the region, crucial for advancing research in fields like evolution and complex diseases.
Holger Pirk from Imperial College London is developing a novel approach to data management system composition called BOSS. The system uses a homoiconic representation of data and code and partial evaluation of queries by components, drawing inspiration from compiler-construction research. BOSS achieves a fully composable design that effectively combines different data models, hardware platforms, and processing engines, enabling features like GPU acceleration and generative data cleaning with minimal overhead. Why it matters: This research on composable database systems can broaden the applicability of data management techniques in the GCC region, enabling more flexible and efficient data processing for various applications.
Eduardo da Veiga Beltrame, bioinformatics lead at ImYoo (a Caltech spinout), presented on scalable methods for single-cell omics data analysis, including kallisto|bustools and scvi-tools. He highlighted their use in ImYoo's decentralized longitudinal study on Inflammatory Bowel Disease (IBD), where patients self-collect capillary blood samples. Beltrame also discussed his research on STEM education programs in Brazil as a visiting scholar at UC Berkeley. Why it matters: This highlights the growing trend of decentralized clinical studies leveraging advanced single-cell technologies for precision medicine, showcasing the potential of remote data collection and analysis in understanding complex diseases.
KAUST held a research conference on Computational and Statistical Interface to Big Data from March 19-21. The conference covered topics like data representation, visualization, parallel algorithms, and large-scale machine learning. Participants came from institutions including the American University of Sharjah, Aalborg University, and others to exchange ideas. Why it matters: The conference highlights KAUST's focus on promoting big data research and collaboration to address challenges and opportunities in various scientific fields within the Kingdom and globally.
The KAUST School (TKS) collaborated with the KAUST Red Sea Research Center (RSRC) to provide hands-on learning experiences for TKS students at the Ibn Sina Research Station. Students measured mangrove heights, crab abundances, and soil properties, guided by RSRC researchers Joanne Ellis, Marco Fusi, and Timothy Thomson. The collaboration aims to expose students to real-world research and foster a passion for science. Why it matters: This collaboration exemplifies how research institutions in the GCC can enrich local education by sharing expertise and resources, inspiring the next generation of scientists and environmental stewards.
KAUST hosted a regional Women in Data Science (WiDS) conference, part of a global event held at over 100 regional institutions led by Stanford University. The KAUST event featured exclusively female speakers and aimed to highlight data science research and applications. KAUST is launching a 'Women in Data Sciences and Technology' initiative to support women's education and careers in the field. Why it matters: This initiative can help address the underrepresentation of women in data science in Saudi Arabia and the broader region.
Michael Holland from NYU's Center for Urban Science & Progress (CUSP) presented a keynote lecture at KAUST's Winter Enrichment Program (WEP) 2015 on the importance of urban science. CUSP, launched in 2012, aims to make New York City a world capital of science and technology through multi-sector research and education. Holland emphasized how analyzing urban data can improve city government, planning, policy, and citizen engagement. Why it matters: As urbanization increases, the development of urban science and the effective use of urban data become crucial for sustainable and efficient city management in the GCC region and globally.